LEEF.analysis - Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Provides simple access functions to read data out of the sqlite RRD database. SQL queries can be configured in a yaml config file and used.

Last updated 2 months ago

2.68 score 23 scripts

bemovi.LEEF - BEMOVI, software for extracting BEhaviour and MOrphology from VIdeos. This version is adapted for LEEF-UZH

An R and ImageJ based work flow to automatically measure behaviour and morphology from videos. Moving individuals are identified by background subtraction, morphology extracted, and trajectories assembled through time from coordinate data. Abundance, morphology and behaviour can be summarized based on trajectory data.

Last updated 11 months ago

3.32 score 2 packages

LEEF - Data Package Containing Only Data and Data Information

Setup package for the LEEF pipeline which loads / installs all necessary packages and functions to run the pipeline.

Last updated 2 years ago

data-analysisdata-processingleef

2.95 score

LEEF.measurement.bemovi - Prepares Movies for Analysis with Bemovi and Extracts Data

Module for the LEEF pipeline to process bemovi data.

Last updated 2 years ago

1.48 score 1 packages

LEEF.measurement.flowcytometer - What the Package Does (Title Case)

More about what it does (maybe more than one line) Use four spaces when indenting paragraphs within the Description.

Last updated 3 years ago

1.48 score 1 packages 2 scripts

LEEF.measurement.flowcam - Pre-Process and Extract Flowcam Data

More about what it does (maybe more than one line) Use four spaces when indenting paragraphs within the Description.

Last updated 3 years ago

1.48 score 1 packages