Package: LEEF 0.9.1

Rainer M. Krug

LEEF: Data Package Containing Only Data and Data Information

Setup package for the LEEF pipeline which loads / installs all necessary packages and functions to run the pipeline.

Authors:Rainer M. Krug [aut, cre], SNF Project 310030_188431 [fnd]

LEEF_0.9.1.tar.gz
LEEF_0.9.1.zip(r-4.5)LEEF_0.9.1.zip(r-4.4)LEEF_0.9.1.zip(r-4.3)
LEEF_0.9.1.tgz(r-4.4-any)LEEF_0.9.1.tgz(r-4.3-any)
LEEF_0.9.1.tar.gz(r-4.5-noble)LEEF_0.9.1.tar.gz(r-4.4-noble)
LEEF.pdf |LEEF.html
LEEF/json (API)

# Install 'LEEF' in R:
install.packages('LEEF', repos = c('https://leef-uzh.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/leef-uzh/leef/issues

On CRAN:

data-analysisdata-processingleef

18 exports 0.00 score 93 dependencies

Last updated 2 years agofrom:178c83e223 (on master). Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 06 2024
R-4.5-winWARNINGSep 06 2024
R-4.5-linuxWARNINGSep 06 2024
R-4.4-winWARNINGSep 06 2024
R-4.4-macWARNINGSep 06 2024
R-4.3-winWARNINGSep 06 2024
R-4.3-macWARNINGSep 06 2024

Exports:addadd_additoradd_archiveradd_extractoradd_pre_processorcontrol_centerinit_LEEFlist_LEEF_packagesopt_directoriesprocessprocess_raw_comp_noneregister_packagesrunrun_additorsrun_archiversrun_extractorsrun_pre_processorssplit_bemovi

Dependencies:askpassbemovi.LEEFBHBiobaseBiocGenericsbitbit64blobbootbriocachemcallrcellrangercircularclassclicpp11crayoncytolibdata.tableDBIdescdiffobjdigestdplyrdrate1071evaluatefansifastmapflowCorefsgenericsgluehmsjsonliteLEEF.archive.defaultLEEF.backend.sqliteLEEF.measurement.bemoviLEEF.measurement.flowcamLEEF.measurement.flowcytometerLEEF.measurement.manualcountLEEF.measurement.o2meterlifecycleloggitmagrittrMASSmatrixStatsmemoisemvtnormopensslpillarpkgbuildpkgconfigpkgloadplogrplyrpraiseprettyunitsprocessxprogressproxypspurrrR.methodsS3R.ooR.utilsR6randomForestRcppreadxlrematchrematch2Rhdf5librlangrprojrootRProtoBufLibRSQLiteS4Vectorssettingsstringistringrsystestthattibbletidyrtidyselecttiffutf8vctrswaldowithryaml

01 Background LEEF Data

Rendered fromc_01_background_leef.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-08-26
Started: 2021-03-08

02 Pipeline Management

Rendered fromc_02_pipeline_management.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-09-09
Started: 2021-03-19

03 Manual Pipeline Management

Rendered fromc_03_running_pipeline_manual.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-03-26
Started: 2021-03-08

05 Block Storage

Rendered fromc_05_block_storage.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-05-26
Started: 2021-05-26

04 Pipeline Server Admin Guide

Rendered fromc_04_pipeline_server_admin.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-03-26
Started: 2021-03-19

1001 Start Pipeline Checklist

Rendered frome_1001_start_pipeline_checklist.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-03-26
Started: 2021-03-08

101 RRD Description

Rendered fromd_101_RRD_Description.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-08-26
Started: 2021-03-08

102 Create LEEF docker Host

Rendered fromd_102_create_LEEF_docker_host.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-08-26
Started: 2021-03-08

9999 Leef Planning

Rendered fromx_9999_Leef_Planning.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2021-03-26
Started: 2021-03-17