Package: LEEF.measurement.bemovi 0.8.40
LEEF.measurement.bemovi: Prepares Movies for Analysis with Bemovi and Extracts Data
Module for the LEEF pipeline to process bemovi data.
Authors:
LEEF.measurement.bemovi_0.8.40.tar.gz
LEEF.measurement.bemovi_0.8.40.zip(r-4.5)LEEF.measurement.bemovi_0.8.40.zip(r-4.4)LEEF.measurement.bemovi_0.8.40.zip(r-4.3)
LEEF.measurement.bemovi_0.8.40.tgz(r-4.4-any)LEEF.measurement.bemovi_0.8.40.tgz(r-4.3-any)
LEEF.measurement.bemovi_0.8.40.tar.gz(r-4.5-noble)LEEF.measurement.bemovi_0.8.40.tar.gz(r-4.4-noble)
LEEF.measurement.bemovi_0.8.40.tgz(r-4.4-emscripten)LEEF.measurement.bemovi_0.8.40.tgz(r-4.3-emscripten)
LEEF.measurement.bemovi.pdf |LEEF.measurement.bemovi.html✨
LEEF.measurement.bemovi/json (API)
# Install 'LEEF.measurement.bemovi' in R: |
install.packages('LEEF.measurement.bemovi', repos = c('https://leef-uzh.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leef-uzh/leef.measurement.bemovi/issues
Last updated 2 years agofrom:1a2748d615 (on master). Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | WARNING | Oct 25 2024 |
R-4.5-linux | WARNING | Oct 25 2024 |
R-4.4-win | WARNING | Oct 25 2024 |
R-4.4-mac | WARNING | Oct 25 2024 |
R-4.3-win | WARNING | Oct 25 2024 |
R-4.3-mac | WARNING | Oct 25 2024 |
Exports:add_new_datacheck_tools_pathclassifyextractor_bemoviextractor_bemovi_classifyextractor_bemovi_filterextractor_bemovi_mergeextractor_bemovi_overlayextractor_bemovi_particleextractor_bemovi_trajectorypre_processor_bemoviraw_data_okregistertools_path
Dependencies:bemovi.LEEFbootcircularclassclidata.tabledplyre1071fansigenericsgluelifecycleloggitmagrittrMASSmvtnormpillarpkgconfigproxypurrrR.methodsS3R.ooR.utilsR6rlangsettingstibbletidyselectutf8vctrswithryaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Check if data in input folder is OK and move to raw data folder | add_new_data |
Checks tools_path() if all tools are there or downloads them | check_tools_path |
Classify 'morph_mvt' nad calculates densities | classify |
Extractor bemovi data | extractor_bemovi |
Extractor bemovi to id species and calculate density | extractor_bemovi_classify |
Extractor bemovi to filter traced particles | extractor_bemovi_filter |
Extractor bemovi data | extractor_bemovi_merge |
Extractor bemovi data trajectories | extractor_bemovi_overlay |
Extractor bemovi data particles | extractor_bemovi_particle |
Extractor bemovi data trajectories | extractor_bemovi_trajectory |
Preprocessor bemovi data | pre_processor_bemovi |
Check if data in raw data folder is OK | raw_data_ok |
Register the processing of bemovi data in the LEEF package | register |
Read and write tools_path | tools_path |